Cambridge MedChem Consulting

Metal Chelation in Enzyme Active Sites

A hard ion like magnesium is almost always octahedrally coordinated predominantly to oxygen. If you see an octahedrally coordinated 'water' in a protein crystal structure, you can bet it's really a magnesium. Soft ions like zinc tend to have less rigid (4- or 5-) coordination to sulphur or nitrogen. Iron can take various oxidation states and thus coordination states. And may change oxidation state during reaction.

Worth reading:- Structural and Functional Aspects of Metal Sites in Biology R Holm, P Kennepohl, and E I Solomon Chem. Rev. 1996, 96, 2239-2314

Examples of Zinc ligands

Examples of Magnesium ligands

mag_ligands

Many thanks to all those who sent examples

See also Metalloprotease Inhibitors

Last updated 18 June 2012